BioMCP-TS

io.github.yeyuan98/biomcp-ts

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

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Connect this server

Add this to your MCP client config — claude_desktop_config.json (Claude Desktop) or .cursor/mcp.json (Cursor).Suits: Claude Desktop · Cursor.

{
  "mcpServers": {
    "biomcp-ts": {
      "command": "npx",
      "args": [
        "-y",
        "biomcp@1.4.3"
      ],
      "env": {
        "NCBI_API_KEY": "<your NCBI_API_KEY>",
        "S2_API_KEY": "<your S2_API_KEY>",
        "OPENFDA_API_KEY": "<your OPENFDA_API_KEY>",
        "ONCOKB_TOKEN": "<your ONCOKB_TOKEN>",
        "DISGENET_API_KEY": "<your DISGENET_API_KEY>"
      }
    }
  }
}
Environment variables
  • NCBI_API_KEYsecretHigher NCBI E-utilities rate limits (3 -> 10 req/s)
  • S2_API_KEYsecretHigher Semantic Scholar rate limits
  • OPENFDA_API_KEYsecretHigher OpenFDA rate limits
  • ONCOKB_TOKENsecretRequired by the variant_oncokb tool (OncoKB annotations)
  • DISGENET_API_KEYsecretRequired for DisGeNET disease-gene associations

A starting point — check the repository for exact arguments and setup. Restart your client after editing the config.

Category
Developer Tools
Version
1.4.3
Registry
active
Published
9/14/2026

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BioMCP-TS — listed on Serverdex

HTML — for your website

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Markdown — for your README

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Nice for visibility, but GitHub marks README links nofollow, so it doesn't pass authority. Use the HTML badge on your site as well.