BioMapper

io.github.trentleslie/biomapper

Resolve metabolite, lipid, protein, gene and lab names to knowledge-graph IDs.

View repository →Homepage →

Connect this server

Add this to your MCP client config — claude_desktop_config.json (Claude Desktop) or .cursor/mcp.json (Cursor).Suits: Claude Desktop · Cursor.

{
  "mcpServers": {
    "biomapper": {
      "command": "uvx",
      "args": [
        "biomapper"
      ],
      "env": {
        "BIOMAPPER_API_KEY": "<your BIOMAPPER_API_KEY>"
      }
    }
  }
}
Environment variables
  • BIOMAPPER_API_KEYsecretOptional API key; the hosted deployment is keyless

A starting point — check the repository for exact arguments and setup. Restart your client after editing the config.

Category
Developer Tools
Version
1.6.3
Registry
active
Published
11/7/2026

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Add the badge to your site

Show visitors that BioMapper is listed here — it’s also the link we check for a free listing.

BioMapper — listed on Serverdex

HTML — for your website

<a href="https://serverdex.io/server/io-github-trentleslie-biomapper?utm_source=badge"><img src="https://serverdex.io/brand/badge.svg" alt="BioMapper — listed on Serverdex" width="123" height="40" loading="lazy"></a>

Recommended. A dofollow link from your own domain is the one that counts for search engines, and it's the link we check for a free listing.

Markdown — for your README

[![BioMapper — listed on Serverdex](https://serverdex.io/brand/badge.svg)](https://serverdex.io/server/io-github-trentleslie-biomapper?utm_source=badge)

Nice for visibility, but GitHub marks README links nofollow, so it doesn't pass authority. Use the HTML badge on your site as well.