io.github.mims-harvard/tooluniverse
io.github.mims-harvard/tooluniverse
2,700+ scientific tools for AI scientists: life science, research, literature, and more.
Connect this server
Add this to your MCP client config — claude_desktop_config.json (Claude Desktop) or .cursor/mcp.json (Cursor).Suits: Claude Desktop · Cursor.
{
"mcpServers": {
"tooluniverse": {
"command": "uvx",
"args": [
"tooluniverse"
],
"env": {
"OPENAI_API_KEY": "<your OPENAI_API_KEY>",
"ANTHROPIC_API_KEY": "<your ANTHROPIC_API_KEY>",
"GEMINI_API_KEY": "<your GEMINI_API_KEY>",
"OPENROUTER_API_KEY": "<your OPENROUTER_API_KEY>",
"AZURE_OPENAI_API_KEY": "<your AZURE_OPENAI_API_KEY>",
"HF_TOKEN": "<your HF_TOKEN>",
"NCBI_API_KEY": "<your NCBI_API_KEY>",
"SEMANTIC_SCHOLAR_API_KEY": "<your SEMANTIC_SCHOLAR_API_KEY>",
"BIOGRID_API_KEY": "<your BIOGRID_API_KEY>",
"DISGENET_API_KEY": "<your DISGENET_API_KEY>",
"OMIM_API_KEY": "<your OMIM_API_KEY>",
"ONCOKB_API_TOKEN": "<your ONCOKB_API_TOKEN>",
"NVIDIA_API_KEY": "<your NVIDIA_API_KEY>",
"USPTO_API_KEY": "<your USPTO_API_KEY>",
"UMLS_API_KEY": "<your UMLS_API_KEY>",
"BRENDA_PASSWORD": "<your BRENDA_PASSWORD>"
}
}
}
}- OPENAI_API_KEYsecretOpenAI API key for LLM-based tool finding and embedding features
- ANTHROPIC_API_KEYsecretAnthropic API key for Claude-based features
- GEMINI_API_KEYsecretGoogle Gemini API key for Gemini-based features
- OPENROUTER_API_KEYsecretOpenRouter API key for accessing 100+ LLM models
- AZURE_OPENAI_API_KEYsecretAzure OpenAI API key (alternative to OpenAI)
- HF_TOKENsecretHuggingFace token for accessing models and datasets
- NCBI_API_KEYsecretNCBI/PubMed API key for higher rate limits (10 req/sec vs 3 req/sec). Register at https://www.ncbi.nlm.nih.gov/account/
- SEMANTIC_SCHOLAR_API_KEYsecretSemantic Scholar API key for higher rate limits (100 req/sec vs 1 req/sec). Register at https://www.semanticscholar.org/product/api
- BIOGRID_API_KEYsecretBioGRID API key for protein-protein interaction queries. Register free at https://webservice.thebiogrid.org/
- DISGENET_API_KEYsecretDisGeNET API key for gene-disease association data. Register free at https://www.disgenet.org/
- OMIM_API_KEYsecretOMIM API key for Mendelian disease data. Register at https://omim.org/api
- ONCOKB_API_TOKENsecretOncoKB API token for precision oncology annotations. Register at https://www.oncokb.org/apiAccess
- NVIDIA_API_KEYsecretNVIDIA NIM API key for AlphaFold2 structure prediction, molecular docking, and genomics tools. Get key at https://build.nvidia.com
- USPTO_API_KEYsecretUSPTO API key for patent data access. Register at https://developer.uspto.gov/
- UMLS_API_KEYsecretUMLS API key for medical terminology and concept mapping. Register at https://uts.nlm.nih.gov/uts/
- BRENDA_PASSWORDsecretBRENDA enzyme database login password
A starting point — check the repository for exact arguments and setup. Restart your client after editing the config.
- Category
- Developer Tools
- Version
- 1.5.9
- Registry
- active
- Published
- 11/5/2026
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Add the badge to your site
Show visitors that io.github.mims-harvard/tooluniverse is listed here — it’s also the link we check for a free listing.
HTML — for your website
<a href="https://serverdex.io/server/io-github-mims-harvard-tooluniverse?utm_source=badge"><img src="https://serverdex.io/brand/badge.svg" alt="io.github.mims-harvard/tooluniverse — listed on Serverdex" width="123" height="40" loading="lazy"></a>Recommended. A dofollow link from your own domain is the one that counts for search engines, and it's the link we check for a free listing.
Markdown — for your README
[](https://serverdex.io/server/io-github-mims-harvard-tooluniverse?utm_source=badge)Nice for visibility, but GitHub marks README links nofollow, so it doesn't pass authority. Use the HTML badge on your site as well.