Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion)

io.github.K-Dense-AI/labmcp-ms-data

MCP server for LC-MS data in mzML/mzMLb and Bruker timsTOF files; vendor formats via msconvert.

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Connect this server

Add this to your MCP client config — claude_desktop_config.json (Claude Desktop) or .cursor/mcp.json (Cursor).Suits: Claude Desktop · Cursor.

{
  "mcpServers": {
    "labmcp-ms-data": {
      "command": "uvx",
      "args": [
        "labmcp-ms-data"
      ]
    }
  }
}

A starting point — check the repository for exact arguments and setup. Restart your client after editing the config.

Category
Developer Tools
Version
0.1.1
Registry
active
Published
9/26/2026

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